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Introduction to Limnology
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Community Ecology: Species Interactions and Community Structure

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EcoSim
http://homepages.together.net/~gentsmin/ecosim.htm
Free software for analysis of species associations, by N. J. Gotelli and G. L. Entsminger. 2001. EcoSim: Null models software for ecology. Version 6.0. Acquired Intelligence Inc. & Kesey-Bear.